1. CisGenome
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis
标签:ChIP-Seq, ChIP-on-chip, Motif analysis, Gene annotation retrieval
2. ChIPMunk
ChIPMunk is a fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. ChIPMunk identifies the strong motif with the maximum Kullback Discrete Information Content in a given set of DNA sequences. *NEW URL* http://autosome.ru/ChIPMunk
标签:ChIP-Seq, Motif analysis,Motif discovery
3. MochiView
Hybrid genome browser and motif visualization/analysis/management desktop software.
标签:Genomics, ChIP-Seq, ChIP-on-chip, RNA-Seq, Motif analysis